STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAN90240.1Pseudogene. (575 aa)    
Predicted Functional Partners:
acnA
Aconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
    
 
 0.694
sce1485
Putative Beta-xylosidase; Family membership; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.668
sce8904
Hypothetical protein predicted by Glimmer/Critica; Belongs to the glycosyl hydrolase 43 family.
   
 0.620
bglX
Beta-glucosidase.
 
   
 0.588
sce0083
Hypothetical protein predicted by Glimmer/Critica.
       0.572
sce1955
Hypothetical protein predicted by Glimmer/Critica; Belongs to the glycosyl hydrolase 43 family.
   
 0.569
sce3118
Hypothetical protein; Putative xylosidase/arabinosidase; Belongs to the glycosyl hydrolase 43 family.
   
 0.566
xynD
Endo-1,4-beta-xylanase; High confidence in function and specificity; Belongs to the glycosyl hydrolase 43 family.
   
 0.539
bglA4
Beta-glucosidase; High confidence in function and specificity.
 
   
 0.525
sce3304
Put. Xylosidase/arabinosidase.
 
   
 0.520
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.