STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BWQ96_09613CCR4-NOT transcription complex subunit 1. (258 aa)    
Predicted Functional Partners:
BWQ96_05050
NOT2_3_5 domain-containing protein.
   
 0.855
BWQ96_06595
CCR4-NOT transcription complex subunit 11.
    
 0.851
BWQ96_03326
CCR4-NOT transcription complex subunit 3.
    
 0.851
BWQ96_02003
Cell differentiation protein RCD1-like.
    
 0.851
BWQ96_00836
CCR4-NOT transcription complex subunit 10.
    
 0.851
BWQ96_09187
CCR4-NOT transcription complex subunit 1.
 
  
  0.849
BWQ96_03090
CCR4-NOT transcription complex subunit 7.
   
 0.849
BWQ96_03611
CCR4-NOT transcription complex subunit 4.
    
 0.836
BWQ96_04836
2',5'-phosphodiesterase 12.
    
 0.648
BWQ96_02061
Carbon catabolite repressor protein 4-like.
    
 0.648
Your Current Organism:
Gracilariopsis chorda
NCBI taxonomy Id: 448386
Other names: G. chorda, Gracilaria chorda
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.