BWQ96_08609 protein (Gracilariopsis chorda) - STRING interaction network

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second shell of interactors

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Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

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Coexpression

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[Homology]

Score

BWQ96_08609

26S proteasome non-ATPase regulatory subunit 2. (1002 aa)

Predicted Functional Partners:

BWQ96_08246

0.999

BWQ96_07997

0.999

BWQ96_05353

0.999

BWQ96_03281

0.999

BWQ96_00832

0.999

BWQ96_09774

0.998

BWQ96_08255

0.998

BWQ96_06533

0.998

BWQ96_05564

0.998

BWQ96_02441

0.998

Your Current Organism:

Gracilariopsis chorda

NCBI taxonomy Id: 448386
Other names: G. chorda, Gracilaria chorda

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BWQ96_00832	BWQ96_02441	A0A2V3J4B1	A0A2V3J084	26S proteasome non-ATPase regulatory subunit 12.	26S proteasome non-ATPase regulatory subunit 7-like.	0.999
BWQ96_00832	BWQ96_03281	A0A2V3J4B1	A0A2V3IY01	26S proteasome non-ATPase regulatory subunit 12.	Putative 26S proteasome non-ATPase regulatory subunit 3.	0.999
BWQ96_00832	BWQ96_05353	A0A2V3J4B1	A0A2V3IRY0	26S proteasome non-ATPase regulatory subunit 12.	26S proteasome non-ATPase regulatory subunit 1-like; Belongs to the proteasome subunit S1 family.	0.999
BWQ96_00832	BWQ96_05564	A0A2V3J4B1	A0A2V3ISI2	26S proteasome non-ATPase regulatory subunit 12.	26S protease regulatory subunit 4-like; Belongs to the AAA ATPase family.	0.999
BWQ96_00832	BWQ96_06533	A0A2V3J4B1	A0A2V3INS0	26S proteasome non-ATPase regulatory subunit 12.	26S proteasome non-ATPase regulatory subunit 13.	0.998
BWQ96_00832	BWQ96_07997	A0A2V3J4B1	A0A2V3IJQ5	26S proteasome non-ATPase regulatory subunit 12.	26S proteasome non-ATPase regulatory subunit 11.	0.999
BWQ96_00832	BWQ96_08246	A0A2V3J4B1	A0A2V3IJ10	26S proteasome non-ATPase regulatory subunit 12.	26S protease regulatory subunit 6A-like; Belongs to the AAA ATPase family.	0.999
BWQ96_00832	BWQ96_08255	A0A2V3J4B1	A0A2V3IIS6	26S proteasome non-ATPase regulatory subunit 12.	26S protease regulatory subunit 8-like; Belongs to the AAA ATPase family.	0.999
BWQ96_00832	BWQ96_08609	A0A2V3J4B1	A0A2V3II24	26S proteasome non-ATPase regulatory subunit 12.	26S proteasome non-ATPase regulatory subunit 2.	0.999
BWQ96_00832	BWQ96_09774	A0A2V3J4B1	A0A2V3IEK4	26S proteasome non-ATPase regulatory subunit 12.	Proteasome subunit alpha type.	0.998
BWQ96_02441	BWQ96_00832	A0A2V3J084	A0A2V3J4B1	26S proteasome non-ATPase regulatory subunit 7-like.	26S proteasome non-ATPase regulatory subunit 12.	0.999
BWQ96_02441	BWQ96_03281	A0A2V3J084	A0A2V3IY01	26S proteasome non-ATPase regulatory subunit 7-like.	Putative 26S proteasome non-ATPase regulatory subunit 3.	0.999
BWQ96_02441	BWQ96_05353	A0A2V3J084	A0A2V3IRY0	26S proteasome non-ATPase regulatory subunit 7-like.	26S proteasome non-ATPase regulatory subunit 1-like; Belongs to the proteasome subunit S1 family.	0.999
BWQ96_02441	BWQ96_05564	A0A2V3J084	A0A2V3ISI2	26S proteasome non-ATPase regulatory subunit 7-like.	26S protease regulatory subunit 4-like; Belongs to the AAA ATPase family.	0.999
BWQ96_02441	BWQ96_06533	A0A2V3J084	A0A2V3INS0	26S proteasome non-ATPase regulatory subunit 7-like.	26S proteasome non-ATPase regulatory subunit 13.	0.999
BWQ96_02441	BWQ96_07997	A0A2V3J084	A0A2V3IJQ5	26S proteasome non-ATPase regulatory subunit 7-like.	26S proteasome non-ATPase regulatory subunit 11.	0.999
BWQ96_02441	BWQ96_08246	A0A2V3J084	A0A2V3IJ10	26S proteasome non-ATPase regulatory subunit 7-like.	26S protease regulatory subunit 6A-like; Belongs to the AAA ATPase family.	0.999
BWQ96_02441	BWQ96_08255	A0A2V3J084	A0A2V3IIS6	26S proteasome non-ATPase regulatory subunit 7-like.	26S protease regulatory subunit 8-like; Belongs to the AAA ATPase family.	0.999
BWQ96_02441	BWQ96_08609	A0A2V3J084	A0A2V3II24	26S proteasome non-ATPase regulatory subunit 7-like.	26S proteasome non-ATPase regulatory subunit 2.	0.998
BWQ96_02441	BWQ96_09774	A0A2V3J084	A0A2V3IEK4	26S proteasome non-ATPase regulatory subunit 7-like.	Proteasome subunit alpha type.	0.998

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Network Stats

number of nodes:

11

number of edges:

39

average node degree:

7.09

avg. local clustering coefficient:

0.856

expected number of edges:

14

PPI enrichment p-value:

2.87e-08

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0071840

Cellular component organization or biogenesis

10 of 1338

0.95

1.02

2.79e-06

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0016887

ATP hydrolysis activity

10 of 218

1.74

4.19

2.53e-14

GO:0016787

Hydrolase activity

11 of 1267

1.02

1.31

1.16e-09

GO:0005524

ATP binding

10 of 1174

1.01

1.22

4.95e-08

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005737

Cytoplasm

11 of 4420

0.48

0.37

0.0039

GO:0043229

Intracellular organelle

11 of 5032

0.42

0.32

0.0081

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:4198

Mixed, incl. Hedgehog ligand biogenesis, and Domain present in ubiquitin-regulatory proteins

10 of 54

2.35

8.35

6.26e-20

CL:4200

Hedgehog ligand biogenesis, and Derlin

7 of 28

2.48

6.43

6.63e-14

CL:4202

Mixed, incl. Sel1-like repeat, and Cellular response to topologically incorrect protein

4 of 23

2.32

2.98

1.52e-06

CL:4261

Mixed, incl. Ovarian tumor domain proteases, and PUL domain

3 of 15

2.38

2.12

9.72e-05

CL:4204

Mixed, incl. Sel1-like repeat, and Derlin

3 of 18

2.3

2.02

0.00014

(more ...)

Reactome Pathways

pathway

description

count in network

strength

signal

false discovery rate

MAP-5689896

Ovarian tumor domain proteases

10 of 17

2.85

11.95

1.64e-24

MAP-5358346

Hedgehog ligand biogenesis

10 of 32

2.57

10.24

1.43e-22

MAP-110320

Translesion Synthesis by POLH

10 of 33

2.56

10.19

1.43e-22

MAP-110313

Translesion synthesis by Y family DNA polymerases bypasses lesions on DNA template

10 of 53

2.35

8.73

6.20e-21

MAP-73893

DNA Damage Bypass

10 of 58

2.32

8.46

1.13e-20

(more ...)

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0008540

Proteasome regulatory particle, base subcomplex

2 of 3

2.9

1.44

0.0025

GOCC:0032991

Protein-containing complex

11 of 2435

0.73

0.7

6.95e-06

GOCC:0005737

Cytoplasm

9 of 2554

0.63

0.47

0.0039

GOCC:0005622

Intracellular

11 of 6178

0.33

0.25

0.0320

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR003959

ATPase, AAA-type, core

10 of 66

2.26

7.62

7.71e-19

IPR003960

ATPase, AAA-type, conserved site

6 of 36

2.3

4.57

3.55e-10

IPR003593

AAA+ ATPase domain

9 of 155

1.84

4.35

4.96e-13

IPR041569

AAA ATPase, AAA+ lid domain

5 of 29

2.32

3.79

2.49e-08

IPR027417

P-loop containing nucleoside triphosphate hydrolase

10 of 686

1.24

1.86

1.33e-09

Protein Domains (SMART)

domain

description

count in network

strength

signal

false discovery rate

SM00382

ATPases associated with a variety of cellular activities

9 of 154

1.85

4.51

9.94e-14

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