STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BWQ96_08357rRNA-processing protein fcf2. (211 aa)    
Predicted Functional Partners:
BWQ96_03561
U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.
   
 
 0.992
BWQ96_04901
Uncharacterized protein.
   
 
 0.991
BWQ96_01979
Sas10 domain-containing protein.
   
 
 0.991
BWQ96_08796
Brix domain-containing protein.
   
   0.990
BWQ96_08113
Protein BFR2.
   
 
 0.990
BWQ96_03681
U3 small nucleolar RNA-associated protein MPP10.
   
   0.990
BWQ96_02812
U3 small nucleolar RNA-associated protein 6.
   
 
 0.990
BWQ96_03922
WD repeat-containing protein 36.
   
 
 0.989
BWQ96_07328
Putative nucleolar protein 5-1.
   
 
 0.988
BWQ96_00764
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 
 0.988
Your Current Organism:
Gracilariopsis chorda
NCBI taxonomy Id: 448386
Other names: G. chorda, Gracilaria chorda
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