STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BWQ96_07813Reverse transcriptase Ty1/copia-type domain-containing protein. (295 aa)    
Predicted Functional Partners:
BWQ96_03057
DIRP domain-containing protein.
    
  0.530
BWQ96_09976
Deoxyuridine 5'-triphosphate nucleotidohydrolase.
    
  0.525
BWQ96_03208
Copia protein.
  
     0.519
BWQ96_10564
Retrovirus-related Pol polyprotein from transposon TNT 1-94.
  
     0.515
BWQ96_03206
Retrovirus-related Pol polyprotein from transposon TNT 1-94.
  
     0.515
BWQ96_10172
Copia protein.
  
     0.512
BWQ96_04358
Putative mitochondrial protein.
  
     0.512
BWQ96_04275
Retrovirus-related Pol polyprotein from transposon TNT 1-94.
  
     0.506
BWQ96_04816
CREB-binding protein.
    
  0.465
BWQ96_02537
DNA cross-link repair 1A protein.
    
  0.457
Your Current Organism:
Gracilariopsis chorda
NCBI taxonomy Id: 448386
Other names: G. chorda, Gracilaria chorda
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.