STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BWQ96_07567DNA-directed RNA polymerase I subunit rpa1. (297 aa)    
Predicted Functional Partners:
BWQ96_02073
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
 
 0.985
BWQ96_05527
DNA-directed RNA polymerase I subunit RPA49.
   
 0.967
BWQ96_03654
DNA-directed RNA polymerases I and III subunit rpac1.
  
 0.964
BWQ96_01935
DNA-directed RNA polymerase I subunit RPA43.
   
 0.943
BWQ96_00888
DNA-directed RNA polymerases I, II, and III subunit rpabc1.
  
 0.938
BWQ96_02143
Putative DNA-directed RNA polymerases I, II, and III subunit RPABC2.
  
 0.934
BWQ96_01400
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
   
 0.934
BWQ96_00464
DNA-directed RNA polymerases I and III subunit RPAC2.
   
 0.932
BWQ96_00329
Putative RRN3-like protein RRN3P1.
   
 0.929
BWQ96_10195
DNA-directed RNA polymerases II, IV and V subunit 3.
  
 0.926
Your Current Organism:
Gracilariopsis chorda
NCBI taxonomy Id: 448386
Other names: G. chorda, Gracilaria chorda
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.