BWQ96_07413 protein (Gracilariopsis chorda) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BWQ96_07413

Casein kinase 1-like protein 3; Belongs to the protein kinase superfamily. (335 aa)

Predicted Functional Partners:

BWQ96_01891

0.791

BWQ96_00701

0.648

BWQ96_06440

0.636

BWQ96_03706

0.603

BWQ96_07877

0.601

BWQ96_01694

0.581

BWQ96_07175

0.571

BWQ96_05354

0.558

BWQ96_00652

0.548

BWQ96_00702

0.545

Your Current Organism:

Gracilariopsis chorda

NCBI taxonomy Id: 448386
Other names: G. chorda, Gracilaria chorda

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BWQ96_00652	BWQ96_00701	A0A2V3J631	A0A2V3J4R6	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	Bystin.	0.996
BWQ96_00652	BWQ96_00702	A0A2V3J631	A0A2V3J4K4	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	Pre-rRNA-processing protein PNO1.	0.973
BWQ96_00652	BWQ96_01694	A0A2V3J631	A0A2V3J2C2	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	20S-pre-rRNA D-site endonuclease nob1; Belongs to the NOB1 family.	0.974
BWQ96_00652	BWQ96_01891	A0A2V3J631	A0A2V3J1W3	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	Protein LTV1-like.	0.996
BWQ96_00652	BWQ96_03706	A0A2V3J631	A0A2V3IWI7	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	Pre-rRNA-processing protein TSR1-like.	0.979
BWQ96_00652	BWQ96_05354	A0A2V3J631	A0A2V3IRX7	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.	0.999
BWQ96_00652	BWQ96_06440	A0A2V3J631	A0A2V3IP39	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	Serine/threonine-protein kinase RIO2.	0.996
BWQ96_00652	BWQ96_07175	A0A2V3J631	A0A2V3IM04	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	40S ribosomal protein S3-B; Belongs to the universal ribosomal protein uS3 family.	0.999
BWQ96_00652	BWQ96_07413	A0A2V3J631	A0A2V3ILC8	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	Casein kinase 1-like protein 3; Belongs to the protein kinase superfamily.	0.548
BWQ96_00701	BWQ96_00652	A0A2V3J4R6	A0A2V3J631	Bystin.	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	0.996
BWQ96_00701	BWQ96_00702	A0A2V3J4R6	A0A2V3J4K4	Bystin.	Pre-rRNA-processing protein PNO1.	0.999
BWQ96_00701	BWQ96_01694	A0A2V3J4R6	A0A2V3J2C2	Bystin.	20S-pre-rRNA D-site endonuclease nob1; Belongs to the NOB1 family.	0.999
BWQ96_00701	BWQ96_01891	A0A2V3J4R6	A0A2V3J1W3	Bystin.	Protein LTV1-like.	0.999
BWQ96_00701	BWQ96_03706	A0A2V3J4R6	A0A2V3IWI7	Bystin.	Pre-rRNA-processing protein TSR1-like.	0.999
BWQ96_00701	BWQ96_05354	A0A2V3J4R6	A0A2V3IRX7	Bystin.	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.	0.986
BWQ96_00701	BWQ96_06440	A0A2V3J4R6	A0A2V3IP39	Bystin.	Serine/threonine-protein kinase RIO2.	0.996
BWQ96_00701	BWQ96_07175	A0A2V3J4R6	A0A2V3IM04	Bystin.	40S ribosomal protein S3-B; Belongs to the universal ribosomal protein uS3 family.	0.995
BWQ96_00701	BWQ96_07413	A0A2V3J4R6	A0A2V3ILC8	Bystin.	Casein kinase 1-like protein 3; Belongs to the protein kinase superfamily.	0.648
BWQ96_00702	BWQ96_00652	A0A2V3J4K4	A0A2V3J631	Pre-rRNA-processing protein PNO1.	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	0.973
BWQ96_00702	BWQ96_00701	A0A2V3J4K4	A0A2V3J4R6	Pre-rRNA-processing protein PNO1.	Bystin.	0.999