STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BWQ96_07067H/ACA ribonucleoprotein complex subunit 4. (505 aa)    
Predicted Functional Partners:
BWQ96_06138
H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.
   
 0.998
BWQ96_00890
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
  
 0.998
BWQ96_00876
H/ACA ribonucleoprotein complex subunit 3.
   
 0.996
BWQ96_06187
Nucleolar protein 56.
   
 
 0.990
BWQ96_07328
Putative nucleolar protein 5-1.
  
 
 0.987
BWQ96_01630
rRNA 2'-O-methyltransferase fibrillarin.
   
 
 0.984
BWQ96_03456
H/ACA ribonucleoprotein complex non-core subunit NAF1.
   
 
 0.954
BWQ96_09146
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
  
 0.924
BWQ96_02163
Ribonuclease P protein subunit p38.
  
 0.924
BWQ96_02428
Putative RNA-binding protein.
   
 
 0.920
Your Current Organism:
Gracilariopsis chorda
NCBI taxonomy Id: 448386
Other names: G. chorda, Gracilaria chorda
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.