STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BWQ96_06900tRNA (Adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6. (419 aa)    
Predicted Functional Partners:
BWQ96_08161
tRNA (adenine(58)-N(1))-methyltransferase.
   
 0.976
BWQ96_07804
tRNA (Adenine(58)-N(1))-methyltransferase catalytic subunit trmt61a.
   
 0.976
BWQ96_07102
Ribosome biogenesis protein WDR12-like.
   
    0.845
BWQ96_04811
Pre-rRNA processing protein FTSJ3.
   
  
 0.812
BWQ96_04812
27S pre-rRNA (Guanosine(2922)-2'-O)-methyltransferase.
   
  
 0.812
BWQ96_01651
ATP-dependent RNA helicase dbp9.
   
   0.801
BWQ96_06901
Multiple RNA-binding domain-containing protein 1.
   
    0.785
BWQ96_02882
Ribosome production factor 2-like.
   
  
 0.783
BWQ96_02012
DEAD-box ATP-dependent RNA helicase 1.
   
   0.762
BWQ96_02727
RNA helicase.
   
   0.737
Your Current Organism:
Gracilariopsis chorda
NCBI taxonomy Id: 448386
Other names: G. chorda, Gracilaria chorda
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.