STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BWQ96_06417Ribosomal large subunit pseudouridine synthase B. (255 aa)    
Predicted Functional Partners:
BWQ96_05483
Glycerophosphodiester phosphodiesterase GDE1.
    
 0.870
BWQ96_04420
O-acyltransferase.
    
 0.746
BWQ96_08442
Phosphatidate phosphatase PAH2.
    
 0.677
BWQ96_05215
Lysophospholipid acyltransferase; Belongs to the membrane-bound acyltransferase family.
     
 0.628
BWQ96_02688
Triacylglycerol lipase SDP1.
     
 0.585
BWQ96_04743
Phosphatidylserine decarboxylase proenzyme.
     
 0.582
BWQ96_02069
acidPPc domain-containing protein.
     
 0.575
BWQ96_00279
PA-phosphatase related-family protein.
     
 0.575
BWQ96_06107
Putative CDP-alcohol phosphatidyltransferase class-I family protein 3; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
     
 0.560
BWQ96_04570
Phosphatidylethanolamine N-methyltransferase; Catalyzes the three sequential steps of the methylation pathway of phosphatidylcholine biosynthesis, the SAM-dependent methylation of phosphatidylethanolamine (PE) to phosphatidylmonomethylethanolamine (PMME), PMME to phosphatidyldimethylethanolamine (PDME), and PDME to phosphatidylcholine (PC); Belongs to the class VI-like SAM-binding methyltransferase superfamily. PEMT/PEM2 methyltransferase family.
   
 0.521
Your Current Organism:
Gracilariopsis chorda
NCBI taxonomy Id: 448386
Other names: G. chorda, Gracilaria chorda
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