STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BWQ96_06501MAP kinase kinase kinase SSK2. (888 aa)    
Predicted Functional Partners:
BWQ96_01954
Protein lap1.
   
 0.863
BWQ96_08267
E3 ubiquitin-protein ligase MIB2.
   
 0.815
BWQ96_07724
Putative ubiquitin-conjugating enzyme protein 17.
   
 0.696
BWQ96_05752
Phosphatase 2C 12.
    
 0.626
BWQ96_00446
Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein.
    
 0.626
BWQ96_05483
Glycerophosphodiester phosphodiesterase GDE1.
    
 0.608
BWQ96_00305
Protein NBR1-like.
    
 0.595
BWQ96_08391
Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1.
    
 0.581
BWQ96_04664
Signal peptide, CUB and EGF-like domain-containing protein 3.
    
 0.581
BWQ96_01716
Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 1.
   
  0.576
Your Current Organism:
Gracilariopsis chorda
NCBI taxonomy Id: 448386
Other names: G. chorda, Gracilaria chorda
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.