STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BWQ96_06445Mitotic spindle assembly checkpoint protein MAD2B. (228 aa)    
Predicted Functional Partners:
BWQ96_07772
DNA polymerase.
    
 0.997
BWQ96_01351
DNA polymerase delta small subunit.
    
 
 0.950
BWQ96_00116
N-acetyltransferase eso1.
   
 0.942
BWQ96_03689
DNA repair protein REV1.
   
 0.919
BWQ96_02834
DNA repair protein REV1; Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template- dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents; Belongs to the DNA polymerase type-Y family.
   
 0.919
BWQ96_01743
DNA repair protein REV1.
   
 0.919
BWQ96_06579
DNA polymerase iota.
   
 0.867
BWQ96_03030
Pachytene checkpoint protein 2-like.
    
 
 0.867
BWQ96_00117
DNA polymerase eta.
   
 0.867
BWQ96_06545
Mitotic spindle assembly checkpoint protein MAD2A.
    
 0.863
Your Current Organism:
Gracilariopsis chorda
NCBI taxonomy Id: 448386
Other names: G. chorda, Gracilaria chorda
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