STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BWQ96_06229Alpha-galactosidase AgaA. (993 aa)    
Predicted Functional Partners:
BWQ96_06739
E3 ubiquitin ligase complex SCF subunit sconC.
   
 0.776
BWQ96_03830
SKP1-like protein 11; Belongs to the SKP1 family.
   
 0.776
BWQ96_07198
Elongin-C.
    
 0.669
BWQ96_07292
E3 ubiquitin-protein ligase RBX1.
    
 0.663
BWQ96_05565
Cullin-1; Belongs to the cullin family.
    
 0.629
BWQ96_03455
Cullin-2; Belongs to the cullin family.
    
 0.629
BWQ96_03454
Cullin-3.
    
 0.629
BWQ96_01162
Cullin-3; Belongs to the cullin family.
    
 0.629
BWQ96_01481
Phosphatidylinositol 4-kinase gamma 4.
    
 0.611
BWQ96_01578
Polyubiquitin.
    
 0.603
Your Current Organism:
Gracilariopsis chorda
NCBI taxonomy Id: 448386
Other names: G. chorda, Gracilaria chorda
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.