STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BWQ96_061693-methyl-2-oxobutanoate hydroxymethyltransferase 2, mitochondrial. (332 aa)    
Predicted Functional Partners:
BWQ96_01929
Pantothenate synthetase.
 
 0.998
BWQ96_06771
Dihydroxy-acid dehydratase.
     
 0.916
BWQ96_04547
Branched-chain-amino-acid aminotransferase.
    
 0.903
BWQ96_07891
Peroxisomal (S)-2-hydroxy-acid oxidase GLO5.
     
 0.779
BWQ96_08469
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins; Belongs to the polypeptide deformylase family.
    
 0.759
BWQ96_10083
Branched-chain-amino-acid aminotransferase-like protein 1.
    
 0.749
BWQ96_09888
Cytosolic non-specific dipeptidase.
     
 0.583
BWQ96_09706
Aminoacylase-1.
     
 0.583
BWQ96_05069
Peptidase M20 domain-containing protein.
     
 0.583
BWQ96_02625
Cys-Gly metallodipeptidase DUG1.
     
 0.583
Your Current Organism:
Gracilariopsis chorda
NCBI taxonomy Id: 448386
Other names: G. chorda, Gracilaria chorda
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.