STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BWQ96_06094THO complex subunit 4C. (294 aa)    
Predicted Functional Partners:
BWQ96_03624
Ran-specific GTPase-activating protein.
   
 0.993
BWQ96_01064
DEAD-box ATP-dependent RNA helicase 56.
   
 0.984
BWQ96_01015
THO complex subunit 2.
   
 0.966
BWQ96_06288
Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family.
   
 0.941
BWQ96_08707
THO complex subunit 5-like.
   
 0.917
BWQ96_03552
THO complex subunit 3.
   
 0.908
BWQ96_08284
Nuclear cap-binding protein subunit 1.
    
 0.899
BWQ96_09538
Nuclear cap-binding protein subunit 2.
   
 0.892
BWQ96_03533
Regulator of nonsense transcripts UPF3.
    
 0.872
BWQ96_02587
THO complex subunit 1.
    
 0.853
Your Current Organism:
Gracilariopsis chorda
NCBI taxonomy Id: 448386
Other names: G. chorda, Gracilaria chorda
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.