STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BWQ96_05398RNA polymerase II transcription factor B subunit 4. (356 aa)    
Predicted Functional Partners:
BWQ96_05568
General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.
   
 0.998
BWQ96_04871
General transcription factor IIH subunit.
   
 0.998
BWQ96_03739
PH_TFIIH domain-containing protein.
    
 0.998
BWQ96_06446
CDK-activating kinase assembly factor MAT1.
    
 0.997
BWQ96_05007
TFIIH basal transcription factor complex helicase repB subunit.
    
 0.997
BWQ96_05655
Cyclin-dependent kinase D-3.
    
 0.996
BWQ96_10284
Cyclin-H.
   
 0.995
BWQ96_06497
Transcription initiation factor IIE subunit alpha.
   
 0.994
BWQ96_00805
General transcription factor IIE subunit 2.
    
 0.993
BWQ96_06776
General transcription factor IIH subunit 5.
    
 0.988
Your Current Organism:
Gracilariopsis chorda
NCBI taxonomy Id: 448386
Other names: G. chorda, Gracilaria chorda
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