BWQ96_06309 protein (Gracilariopsis chorda) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BWQ96_06309

Ornithine aminotransferase. (447 aa)

Predicted Functional Partners:

BWQ96_07317

0.933

BWQ96_03748

0.927

BWQ96_03427

0.927

BWQ96_02357

0.922

BWQ96_09141

0.915

BWQ96_03975

0.906

BWQ96_02828

0.895

BWQ96_01193

0.894

BWQ96_03537

0.886

BWQ96_10244

0.857

Your Current Organism:

Gracilariopsis chorda

NCBI taxonomy Id: 448386
Other names: G. chorda, Gracilaria chorda

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BWQ96_01193	BWQ96_02357	A0A2V3J3T5	A0A2V3J0P4	Arginine biosynthesis bifunctional protein ArgJ, mitochondrial; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of acetylglutamate from glutamate and acetyl-CoA, and of ornithine by transacetylation between acetylornithine and glutamate; Belongs to the ArgJ family.	Argininosuccinate lyase.	0.971
BWQ96_01193	BWQ96_03427	A0A2V3J3T5	A0A2V3IXM8	Arginine biosynthesis bifunctional protein ArgJ, mitochondrial; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of acetylglutamate from glutamate and acetyl-CoA, and of ornithine by transacetylation between acetylornithine and glutamate; Belongs to the ArgJ family.	Ornithine carbamoyltransferase, chloroplastic; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.	0.928
BWQ96_01193	BWQ96_03537	A0A2V3J3T5	A0A2V3IX72	Arginine biosynthesis bifunctional protein ArgJ, mitochondrial; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of acetylglutamate from glutamate and acetyl-CoA, and of ornithine by transacetylation between acetylornithine and glutamate; Belongs to the ArgJ family.	Putative gamma-glutamyl phosphate reductase.	0.463
BWQ96_01193	BWQ96_03748	A0A2V3J3T5	A0A2V3IWS8	Arginine biosynthesis bifunctional protein ArgJ, mitochondrial; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of acetylglutamate from glutamate and acetyl-CoA, and of ornithine by transacetylation between acetylornithine and glutamate; Belongs to the ArgJ family.	Amino-acid acetyltransferase.	0.993
BWQ96_01193	BWQ96_06309	A0A2V3J3T5	A0A2V3IS59	Arginine biosynthesis bifunctional protein ArgJ, mitochondrial; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of acetylglutamate from glutamate and acetyl-CoA, and of ornithine by transacetylation between acetylornithine and glutamate; Belongs to the ArgJ family.	Ornithine aminotransferase.	0.894
BWQ96_01193	BWQ96_07317	A0A2V3J3T5	A0A2V3ILJ9	Arginine biosynthesis bifunctional protein ArgJ, mitochondrial; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of acetylglutamate from glutamate and acetyl-CoA, and of ornithine by transacetylation between acetylornithine and glutamate; Belongs to the ArgJ family.	Glutamate 5-kinase.	0.509
BWQ96_01193	BWQ96_09141	A0A2V3J3T5	A0A2V3IG93	Arginine biosynthesis bifunctional protein ArgJ, mitochondrial; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of acetylglutamate from glutamate and acetyl-CoA, and of ornithine by transacetylation between acetylornithine and glutamate; Belongs to the ArgJ family.	Putative N-acetyl-gamma-glutamyl-phosphate reductase, chloroplastic.	0.991
BWQ96_01193	BWQ96_10244	A0A2V3J3T5	A0A2V3IDA3	Arginine biosynthesis bifunctional protein ArgJ, mitochondrial; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of acetylglutamate from glutamate and acetyl-CoA, and of ornithine by transacetylation between acetylornithine and glutamate; Belongs to the ArgJ family.	Argininosuccinate synthase.	0.947
BWQ96_02357	BWQ96_01193	A0A2V3J0P4	A0A2V3J3T5	Argininosuccinate lyase.	Arginine biosynthesis bifunctional protein ArgJ, mitochondrial; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of acetylglutamate from glutamate and acetyl-CoA, and of ornithine by transacetylation between acetylornithine and glutamate; Belongs to the ArgJ family.	0.971
BWQ96_02357	BWQ96_02828	A0A2V3J0P4	A0A2V3IYX3	Argininosuccinate lyase.	Antizyme inhibitor 2; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	0.677
BWQ96_02357	BWQ96_03427	A0A2V3J0P4	A0A2V3IXM8	Argininosuccinate lyase.	Ornithine carbamoyltransferase, chloroplastic; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.	0.925
BWQ96_02357	BWQ96_03537	A0A2V3J0P4	A0A2V3IX72	Argininosuccinate lyase.	Putative gamma-glutamyl phosphate reductase.	0.505
BWQ96_02357	BWQ96_03748	A0A2V3J0P4	A0A2V3IWS8	Argininosuccinate lyase.	Amino-acid acetyltransferase.	0.987
BWQ96_02357	BWQ96_06309	A0A2V3J0P4	A0A2V3IS59	Argininosuccinate lyase.	Ornithine aminotransferase.	0.922
BWQ96_02357	BWQ96_07317	A0A2V3J0P4	A0A2V3ILJ9	Argininosuccinate lyase.	Glutamate 5-kinase.	0.483
BWQ96_02357	BWQ96_09141	A0A2V3J0P4	A0A2V3IG93	Argininosuccinate lyase.	Putative N-acetyl-gamma-glutamyl-phosphate reductase, chloroplastic.	0.964
BWQ96_02357	BWQ96_10244	A0A2V3J0P4	A0A2V3IDA3	Argininosuccinate lyase.	Argininosuccinate synthase.	0.996
BWQ96_02828	BWQ96_02357	A0A2V3IYX3	A0A2V3J0P4	Antizyme inhibitor 2; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	Argininosuccinate lyase.	0.677
BWQ96_02828	BWQ96_03975	A0A2V3IYX3	A0A2V3IW57	Antizyme inhibitor 2; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	Biotin synthase.	0.660
BWQ96_02828	BWQ96_06309	A0A2V3IYX3	A0A2V3IS59	Antizyme inhibitor 2; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	Ornithine aminotransferase.	0.895