STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BWQ96_05206Ribosomal RNA large subunit methyltransferase E. (163 aa)    
Predicted Functional Partners:
BWQ96_07328
Putative nucleolar protein 5-1.
   
 0.901
BWQ96_03697
Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.
   
   0.871
BWQ96_06915
Ribosome biogenesis protein NSA2-like.
  
 
 0.850
BWQ96_00070
Nucleolar complex protein 2-like.
   
 
 0.849
BWQ96_07102
Ribosome biogenesis protein WDR12-like.
   
 
 0.835
BWQ96_06760
Putative ribosome biogenesis protein RLP24.
   
 
 0.834
BWQ96_08670
Putative rRNA-processing protein EBP2-like.
   
 
 0.826
BWQ96_02428
Putative RNA-binding protein.
   
 
 0.826
BWQ96_08258
60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.
   
 
 0.825
BWQ96_08136
60S ribosomal protein L7-4.
   
   0.811
Your Current Organism:
Gracilariopsis chorda
NCBI taxonomy Id: 448386
Other names: G. chorda, Gracilaria chorda
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