STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BWQ96_03955G patch domain-containing protein 4. (174 aa)    
Predicted Functional Partners:
BWQ96_03065
U3 small nucleolar RNA-associated protein 7.
   
   0.891
BWQ96_00701
Bystin.
   
   0.881
BWQ96_10286
Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2.
   
 
 0.878
BWQ96_05834
Nucleolar MIF4G domain-containing protein 1.
   
   0.857
BWQ96_01630
rRNA 2'-O-methyltransferase fibrillarin.
   
   0.851
BWQ96_06288
Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family.
   
   0.848
BWQ96_09146
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
   
   0.757
BWQ96_02163
Ribonuclease P protein subunit p38.
   
   0.757
BWQ96_02013
Protein MAK16 homolog; Belongs to the MAK16 family.
   
   0.746
BWQ96_03159
Casein kinase II subunit alpha-1; Belongs to the protein kinase superfamily.
    
 
 0.687
Your Current Organism:
Gracilariopsis chorda
NCBI taxonomy Id: 448386
Other names: G. chorda, Gracilaria chorda
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.