STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BWQ96_03767Ubiquitin carboxyl-terminal hydrolase. (452 aa)    
Predicted Functional Partners:
BWQ96_10064
WD repeat-containing protein 48.
    
 0.952
BWQ96_03081
Putative catabolite repression protein creC.
    
 0.937
BWQ96_07592
Ubiquitin-40S ribosomal protein S27a.
    
  0.856
BWQ96_07487
Ubiquitin-60S ribosomal protein L40.
    
 0.845
BWQ96_02698
Fanconi anemia group D2 protein.
    
 0.806
BWQ96_01481
Phosphatidylinositol 4-kinase gamma 4.
    
 0.731
BWQ96_01578
Polyubiquitin.
    
 0.731
BWQ96_03856
Fanconi anemia group I protein-like.
    
 0.717
BWQ96_08640
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
   
  0.687
BWQ96_05838
E3 ubiquitin-protein ligase FANCL.
     
 0.666
Your Current Organism:
Gracilariopsis chorda
NCBI taxonomy Id: 448386
Other names: G. chorda, Gracilaria chorda
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.