STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BWQ96_04488E3 ubiquitin-protein ligase COP1. (486 aa)    
Predicted Functional Partners:
BWQ96_07724
Putative ubiquitin-conjugating enzyme protein 17.
    
 0.998
BWQ96_08267
E3 ubiquitin-protein ligase MIB2.
    
 0.996
BWQ96_07592
Ubiquitin-40S ribosomal protein S27a.
    
 0.917
BWQ96_07487
Ubiquitin-60S ribosomal protein L40.
    
  0.892
BWQ96_03742
DET1-like.
  
 
 0.890
BWQ96_01481
Phosphatidylinositol 4-kinase gamma 4.
    
 0.876
BWQ96_01376
Deoxyribodipyrimidine photo-lyase.
    
 0.852
BWQ96_06368
Uncharacterized protein.
    
 0.849
BWQ96_01578
Polyubiquitin.
    
 0.840
BWQ96_06060
E3 ubiquitin-protein ligase COP1.
  
  
 
0.838
Your Current Organism:
Gracilariopsis chorda
NCBI taxonomy Id: 448386
Other names: G. chorda, Gracilaria chorda
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.