STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BWQ96_02966Switch 2. (1051 aa)    
Predicted Functional Partners:
BWQ96_02237
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.946
BWQ96_09025
DNA excision repair protein ckn1.
    
 0.945
BWQ96_01673
DNA-directed RNA polymerases II, IV and V subunit 9A.
    
 0.945
BWQ96_10195
DNA-directed RNA polymerases II, IV and V subunit 3.
   
  0.915
BWQ96_07037
DNA repair protein UVH3.
    
 0.908
BWQ96_02143
Putative DNA-directed RNA polymerases I, II, and III subunit RPABC2.
    
 0.908
BWQ96_00651
DNA-directed RNA polymerase II subunit RPB7.
    
 0.908
BWQ96_02458
DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.
    
  0.907
BWQ96_00888
DNA-directed RNA polymerases I, II, and III subunit rpabc1.
    
  0.907
BWQ96_01456
DNA-directed RNA polymerases II, IV and V subunit 10.
    
  0.906
Your Current Organism:
Gracilariopsis chorda
NCBI taxonomy Id: 448386
Other names: G. chorda, Gracilaria chorda
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.