STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BWQ96_03745Uncharacterized protein. (296 aa)    
Predicted Functional Partners:
BWQ96_09173
Cell cycle checkpoint control protein RAD9A.
    
 0.997
BWQ96_03829
Checkpoint protein; Belongs to the HUS1 family.
    
 0.997
BWQ96_00761
Cell cycle checkpoint protein RAD17.
   
 0.977
BWQ96_04531
Replication factor C subunit 4.
   
 0.974
BWQ96_10189
Replication factor C subunit 5.
   
 0.955
BWQ96_08985
Replication factor C subunit 2.
   
 0.949
BWQ96_02617
Replication factor C subunit 3.
   
 0.935
FEN1
Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...]
   
 0.907
BWQ96_06832
Serine/threonine-protein kinase ATR; Belongs to the PI3/PI4-kinase family.
    
 0.899
BWQ96_00606
Serine/threonine-protein kinase ATM; Belongs to the PI3/PI4-kinase family.
    
 0.898
Your Current Organism:
Gracilariopsis chorda
NCBI taxonomy Id: 448386
Other names: G. chorda, Gracilaria chorda
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.