STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BWQ96_02267Histone deacetylase 6. (132 aa)    
Predicted Functional Partners:
BWQ96_05290
Protein MRG2.
    
 0.755
BWQ96_07370
Paired amphipathic helix protein Sin3-like 2.
    
 0.714
BWQ96_00535
Paired amphipathic helix protein Sin3a.
    
 0.714
BWQ96_09199
Histone-binding protein RBBP7.
   
 0.706
BWQ96_07178
WD-40 repeat-containing protein MSI4.
   
 0.706
BWQ96_04500
Uncharacterized protein.
    
 0.705
BWQ96_03624
Ran-specific GTPase-activating protein.
   
 0.658
BWQ96_07487
Ubiquitin-60S ribosomal protein L40.
    
  0.638
BWQ96_04816
CREB-binding protein.
    
 0.619
BWQ96_06368
Uncharacterized protein.
    
 0.618
Your Current Organism:
Gracilariopsis chorda
NCBI taxonomy Id: 448386
Other names: G. chorda, Gracilaria chorda
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.