STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BWQ96_01835DNA repair and recombination protein RAD54B. (920 aa)    
Predicted Functional Partners:
BWQ96_09142
DNA repair protein RAD51 homolog; Binds to single and double-stranded DNA and exhibits DNA- dependent ATPase activity. Underwinds duplex DNA. Belongs to the RecA family. RAD51 subfamily.
   
 
 0.895
BWQ96_03980
DNA repair protein RAD51-like.
   
 
 0.895
BWQ96_00298
Crossover junction endonuclease MUS81.
   
 0.844
BWQ96_00750
Exonuclease 1.
   
 0.815
BWQ96_02537
DNA cross-link repair 1A protein.
   
 0.779
BWQ96_08748
Uncharacterized protein.
   
 
 0.763
BWQ96_03650
ATP-dependent DNA helicase PcrA.
   
 
 0.763
BWQ96_08208
DNA repair protein RAD52-like.
    
 
 0.758
BWQ96_07941
DNA repair protein RAD51-like.
   
 
 0.756
BWQ96_07227
Meiotic recombination protein DMC1-like; Belongs to the RecA family.
   
 
 0.756
Your Current Organism:
Gracilariopsis chorda
NCBI taxonomy Id: 448386
Other names: G. chorda, Gracilaria chorda
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