STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BWQ96_01641Sirohydrochlorin ferrochelatase, chloroplastic. (142 aa)    
Predicted Functional Partners:
BWQ96_10798
Siroheme synthase.
  
 
 0.876
BWQ96_04154
Uroporphyrinogen-III C-methyltransferase.
  
 
 0.876
BWQ96_05723
Glutamyl-tRNA reductase; Belongs to the glutamyl-tRNA reductase family.
  
 
 0.729
BWQ96_06565
Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.
     
 0.729
BWQ96_05833
Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.
     
 0.729
BWQ96_03213
Uroporphyrinogen decarboxylase.
    
 0.700
BWQ96_02862
Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
    
 0.700
BWQ96_09887
Ferrochelatase; Belongs to the ferrochelatase family.
      
 0.463
BWQ96_04994
6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.
      
 0.463
BWQ96_02147
Porphobilinogen deaminase, chloroplastic.
     
 0.462
Your Current Organism:
Gracilariopsis chorda
NCBI taxonomy Id: 448386
Other names: G. chorda, Gracilaria chorda
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