BWQ96_01441 protein (Gracilariopsis chorda) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BWQ96_01441

Protein kinase and PP2C-like domain-containing protein. (647 aa)

Predicted Functional Partners:

BWQ96_03350

0.565

BWQ96_07724

0.555

BWQ96_06060

0.550

BWQ96_04488

0.550

BWQ96_08659

0.527

BWQ96_05307

0.510

BWQ96_02058

0.504

BWQ96_00406

0.496

BWQ96_00040

0.493

BWQ96_07592

0.488

Your Current Organism:

Gracilariopsis chorda

NCBI taxonomy Id: 448386
Other names: G. chorda, Gracilaria chorda

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BWQ96_00040	BWQ96_00406	A0A2V3JBQ2	A0A2V3J5U8	Mitogen-activated protein kinase 14; Belongs to the protein kinase superfamily.	CBL-interacting protein kinase 19; Belongs to the protein kinase superfamily.	0.480
BWQ96_00040	BWQ96_01441	A0A2V3JBQ2	A0A2V3J3C2	Mitogen-activated protein kinase 14; Belongs to the protein kinase superfamily.	Protein kinase and PP2C-like domain-containing protein.	0.493
BWQ96_00040	BWQ96_02058	A0A2V3JBQ2	A0A2V3J123	Mitogen-activated protein kinase 14; Belongs to the protein kinase superfamily.	CBL-interacting protein kinase 31.	0.518
BWQ96_00040	BWQ96_07592	A0A2V3JBQ2	A0A2V3IKT3	Mitogen-activated protein kinase 14; Belongs to the protein kinase superfamily.	Ubiquitin-40S ribosomal protein S27a.	0.402
BWQ96_00406	BWQ96_00040	A0A2V3J5U8	A0A2V3JBQ2	CBL-interacting protein kinase 19; Belongs to the protein kinase superfamily.	Mitogen-activated protein kinase 14; Belongs to the protein kinase superfamily.	0.480
BWQ96_00406	BWQ96_01441	A0A2V3J5U8	A0A2V3J3C2	CBL-interacting protein kinase 19; Belongs to the protein kinase superfamily.	Protein kinase and PP2C-like domain-containing protein.	0.496
BWQ96_00406	BWQ96_05307	A0A2V3J5U8	A0A2V3IS47	CBL-interacting protein kinase 19; Belongs to the protein kinase superfamily.	Mitogen-activated protein kinase 14.	0.511
BWQ96_01441	BWQ96_00040	A0A2V3J3C2	A0A2V3JBQ2	Protein kinase and PP2C-like domain-containing protein.	Mitogen-activated protein kinase 14; Belongs to the protein kinase superfamily.	0.493
BWQ96_01441	BWQ96_00406	A0A2V3J3C2	A0A2V3J5U8	Protein kinase and PP2C-like domain-containing protein.	CBL-interacting protein kinase 19; Belongs to the protein kinase superfamily.	0.496
BWQ96_01441	BWQ96_02058	A0A2V3J3C2	A0A2V3J123	Protein kinase and PP2C-like domain-containing protein.	CBL-interacting protein kinase 31.	0.504
BWQ96_01441	BWQ96_03350	A0A2V3J3C2	A0A2V3IXI1	Protein kinase and PP2C-like domain-containing protein.	Pyruvate dehydrogenase E1 component subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.	0.565
BWQ96_01441	BWQ96_04488	A0A2V3J3C2	A0A2V3IX56	Protein kinase and PP2C-like domain-containing protein.	E3 ubiquitin-protein ligase COP1.	0.550
BWQ96_01441	BWQ96_05307	A0A2V3J3C2	A0A2V3IS47	Protein kinase and PP2C-like domain-containing protein.	Mitogen-activated protein kinase 14.	0.510
BWQ96_01441	BWQ96_06060	A0A2V3J3C2	A0A2V3ISW4	Protein kinase and PP2C-like domain-containing protein.	E3 ubiquitin-protein ligase COP1.	0.550
BWQ96_01441	BWQ96_07592	A0A2V3J3C2	A0A2V3IKT3	Protein kinase and PP2C-like domain-containing protein.	Ubiquitin-40S ribosomal protein S27a.	0.488
BWQ96_01441	BWQ96_07724	A0A2V3J3C2	A0A2V3IKF2	Protein kinase and PP2C-like domain-containing protein.	Putative ubiquitin-conjugating enzyme protein 17.	0.555
BWQ96_01441	BWQ96_08659	A0A2V3J3C2	A0A2V3IHY5	Protein kinase and PP2C-like domain-containing protein.	Methionyl-tRNA formyltransferase.	0.527
BWQ96_02058	BWQ96_00040	A0A2V3J123	A0A2V3JBQ2	CBL-interacting protein kinase 31.	Mitogen-activated protein kinase 14; Belongs to the protein kinase superfamily.	0.518
BWQ96_02058	BWQ96_01441	A0A2V3J123	A0A2V3J3C2	CBL-interacting protein kinase 31.	Protein kinase and PP2C-like domain-containing protein.	0.504
BWQ96_03350	BWQ96_01441	A0A2V3IXI1	A0A2V3J3C2	Pyruvate dehydrogenase E1 component subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.	Protein kinase and PP2C-like domain-containing protein.	0.565