STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BWQ96_00006Queuine tRNA-ribosyltransferase catalytic subunit 1; Catalytic subunit of the queuine tRNA-ribosyltransferase (TGT) that catalyzes the base-exchange of a guanine (G) residue with queuine (Q) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, formi [...] (425 aa)    
Predicted Functional Partners:
BWQ96_01588
Queuine tRNA-ribosyltransferase.
  
0.949
BWQ96_03749
Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.
 
 
  0.942
BWQ96_00588
Epoxyqueuosine reductase.
  
 
 0.668
BWQ96_03924
S-adenosylmethionine:tRNA ribosyltransferase-isomerase.
 
     0.551
BWQ96_02651
Cell division cycle 5-like protein.
 
      0.550
BWQ96_07067
H/ACA ribonucleoprotein complex subunit 4.
  
  
 0.524
BWQ96_00832
26S proteasome non-ATPase regulatory subunit 12.
 
      0.472
BWQ96_01243
Thymidylate kinase.
  
 
 0.461
BWQ96_09976
Deoxyuridine 5'-triphosphate nucleotidohydrolase.
    
  0.445
BWQ96_03658
Bifunctional protein FolD 2.
  
 
  0.434
Your Current Organism:
Gracilariopsis chorda
NCBI taxonomy Id: 448386
Other names: G. chorda, Gracilaria chorda
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