STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BWQ96_00024HIV Tat-specific factor 1-like. (317 aa)    
Predicted Functional Partners:
BWQ96_01135
Splicing factor 3B subunit 1.
    
 
 0.980
BWQ96_00971
Crooked neck-like protein 1.
   
 
 0.966
BWQ96_06541
Putative ATP-dependent RNA helicase DDX46.
   
 0.927
BWQ96_01387
Splicing factor 3A subunit 2.
   
 
 0.897
BWQ96_05067
Splicing factor 3B subunit 2.
   
 
 0.845
BWQ96_03195
Small nuclear ribonucleoprotein F.
   
   0.814
BWQ96_03589
Splicing factor 3A subunit 1.
    
 
 0.788
BWQ96_06947
U2 small nuclear ribonucleoprotein A.
    
 
 0.784
BWQ96_07036
PHD finger-like domain-containing protein 5B.
    
 
 0.776
BWQ96_05531
Splicing factor 3B subunit 6-like protein.
    
 
 0.768
Your Current Organism:
Gracilariopsis chorda
NCBI taxonomy Id: 448386
Other names: G. chorda, Gracilaria chorda
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.