STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BWQ96_00298Crossover junction endonuclease MUS81. (1080 aa)    
Predicted Functional Partners:
BWQ96_08815
DNA excision repair protein ERCC-1.
   
 0.968
BWQ96_00800
Asparagine--tRNA ligase, cytoplasmic.
   
 0.953
BWQ96_03635
Tudor domain-containing protein 3.
    
 0.950
BWQ96_07037
DNA repair protein UVH3.
   
 0.931
BWQ96_02705
DNA repair endonuclease XPF.
    
 0.921
BWQ96_05419
Replication protein A subunit.
    
 0.914
BWQ96_02405
D-inositol 3-phosphate glycosyltransferase.
    
 0.909
BWQ96_05838
E3 ubiquitin-protein ligase FANCL.
    
 0.903
BWQ96_09142
DNA repair protein RAD51 homolog; Binds to single and double-stranded DNA and exhibits DNA- dependent ATPase activity. Underwinds duplex DNA. Belongs to the RecA family. RAD51 subfamily.
   
 0.885
BWQ96_03980
DNA repair protein RAD51-like.
   
 0.885
Your Current Organism:
Gracilariopsis chorda
NCBI taxonomy Id: 448386
Other names: G. chorda, Gracilaria chorda
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.