STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BWQ96_00252Upstream activation factor subunit UAF30. (260 aa)    
Predicted Functional Partners:
BWQ96_03435
Putative ATP-dependent DNA helicase CHR12.
    
 0.879
BWQ96_04187
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1.
   
 0.837
BWQ96_02935
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A.
   
 0.837
BWQ96_00621
Armadillo repeat-containing protein LFR.
    
 0.822
BWQ96_02422
AT-rich interactive domain-containing protein 2.
   
 0.820
BWQ96_02346
Histone H2A deubiquitinase MYSM1.
    
 0.817
BWQ96_05532
Trifunctional purine biosynthetic protein adenosine-3.
   
 
  0.806
BWQ96_10343
SWI/SNF complex subunit SMARCC2.
    
 0.774
BWQ96_06672
SWI/SNF and RSC complexes subunit ssr2.
    
 0.774
BWQ96_06489
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
  0.719
Your Current Organism:
Gracilariopsis chorda
NCBI taxonomy Id: 448386
Other names: G. chorda, Gracilaria chorda
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.