Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| LHA_0063 | ubiB | LHA_0063 | LHA_0104 | 2-polyprenyl-6-methoxyphenol hydroxylase. | Putative ubiquinone biosynthesis protein ubiB; Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis. | 0.475 |
| LHA_0063 | ubiG | LHA_0063 | LHA_1454 | 2-polyprenyl-6-methoxyphenol hydroxylase. | 3-demethylubiquinone-9 3-methyltransferase; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the methyltransferase superfamily. UbiG/COQ3 family. | 0.967 |
| LHA_0063 | ubiH | LHA_0063 | LHA_0062 | 2-polyprenyl-6-methoxyphenol hydroxylase. | 2-octaprenyl-6-methoxyphenol hydroxylase. | 0.843 |
| LHA_0105 | LHA_0107 | LHA_0105 | LHA_0107 | Homologs of previously reported genes of unknown function. | Exported protein of unknown function; No homology to any previously reported sequences. | 0.626 |
| LHA_0105 | tatA | LHA_0105 | LHA_0103 | Homologs of previously reported genes of unknown function. | Sec-independent protein translocase protein tatA/E homolog; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. | 0.845 |
| LHA_0105 | tatB | LHA_0105 | LHA_0102 | Homologs of previously reported genes of unknown function. | Sec-independent protein translocase TatB. | 0.813 |
| LHA_0105 | ubiB | LHA_0105 | LHA_0104 | Homologs of previously reported genes of unknown function. | Putative ubiquinone biosynthesis protein ubiB; Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis. | 0.829 |
| LHA_0105 | ubiE | LHA_0105 | LHA_0106 | Homologs of previously reported genes of unknown function. | Ubiquinone/menaquinone biosynthesis methyltransferase ubiE; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2). | 0.884 |
| LHA_0107 | LHA_0105 | LHA_0107 | LHA_0105 | Exported protein of unknown function; No homology to any previously reported sequences. | Homologs of previously reported genes of unknown function. | 0.626 |
| LHA_0107 | tatA | LHA_0107 | LHA_0103 | Exported protein of unknown function; No homology to any previously reported sequences. | Sec-independent protein translocase protein tatA/E homolog; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. | 0.533 |
| LHA_0107 | tatB | LHA_0107 | LHA_0102 | Exported protein of unknown function; No homology to any previously reported sequences. | Sec-independent protein translocase TatB. | 0.533 |
| LHA_0107 | ubiB | LHA_0107 | LHA_0104 | Exported protein of unknown function; No homology to any previously reported sequences. | Putative ubiquinone biosynthesis protein ubiB; Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis. | 0.533 |
| LHA_0107 | ubiE | LHA_0107 | LHA_0106 | Exported protein of unknown function; No homology to any previously reported sequences. | Ubiquinone/menaquinone biosynthesis methyltransferase ubiE; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2). | 0.575 |
| LHA_3158 | ubiB | LHA_3158 | LHA_0104 | PAS sensor histidine kinase domain protein. | Putative ubiquinone biosynthesis protein ubiB; Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis. | 0.495 |
| recJ | ubiB | LHA_1662 | LHA_0104 | Single-stranded-DNA-specific exonuclease recJ. | Putative ubiquinone biosynthesis protein ubiB; Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis. | 0.515 |
| tatA | LHA_0105 | LHA_0103 | LHA_0105 | Sec-independent protein translocase protein tatA/E homolog; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. | Homologs of previously reported genes of unknown function. | 0.845 |
| tatA | LHA_0107 | LHA_0103 | LHA_0107 | Sec-independent protein translocase protein tatA/E homolog; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. | Exported protein of unknown function; No homology to any previously reported sequences. | 0.533 |
| tatA | tatB | LHA_0103 | LHA_0102 | Sec-independent protein translocase protein tatA/E homolog; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. | Sec-independent protein translocase TatB. | 0.803 |
| tatA | ubiB | LHA_0103 | LHA_0104 | Sec-independent protein translocase protein tatA/E homolog; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. | Putative ubiquinone biosynthesis protein ubiB; Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis. | 0.839 |
| tatA | ubiE | LHA_0103 | LHA_0106 | Sec-independent protein translocase protein tatA/E homolog; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. | Ubiquinone/menaquinone biosynthesis methyltransferase ubiE; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2). | 0.818 |
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