Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LHA_0164Homologs of previously reported genes of unknown function. (315 aa)    
Predicted Functional Partners:
LHA_0165
Deoxyribodipyrimidine photo-lyase; Belongs to the DNA photolyase family.
  
  
 0.887
LHA_1056
Protein of unknown function; No homology to any previously reported sequences.
  
  
 0.887
LHA_0652
tRNA methyl transferase-like protein.
 
     0.659
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
  
  
 0.522
LHA_1901
Protein of unknown function; No homology to any previously reported sequences.
  
  
 0.506
LHA_0896
Nucleoside-diphosphate sugar epimerase.
  
    0.487
LHA_0163
Protein of unknown function; No homology to any previously reported sequences.
       0.465
pheT
Phenylalanyl-tRNA synthetase beta chain; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
       0.461
LHA_0743
Methylated-DNA--protein-cysteine methyltransferase.
       0.459
cfa
Cyclopropane-fatty-acyl-phospholipid synthase.
  
  
 0.426
Your Current Organism:
Legionella hackeliae
NCBI taxonomy Id: 449
Other names: ATCC 35250, CCUG 31232, CCUG 31232 A, CIP 103844, DSM 19214, JCM 7563, L. hackeliae, NCTC 11979, strain Lansing 2
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