LHA_0461 protein (Legionella hackeliae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LHA_0461

Homologs of previously reported genes of unknown function. (675 aa)

Predicted Functional Partners:

LHA_0462

0.866

recR

0.866

LHA_0464

0.866

dnaX

0.814

LHA_1765

0.564

Your Current Organism:

Legionella hackeliae

NCBI taxonomy Id: 449
Other names: ATCC 35250, CCUG 31232, CCUG 31232 A, CIP 103844, DSM 19214, JCM 7563, L. hackeliae, NCTC 11979, strain Lansing 2

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LHA_0461	LHA_0462	LHA_0461	LHA_0462	Homologs of previously reported genes of unknown function.	Homologs of previously reported genes of unknown function.	0.866
LHA_0461	LHA_0464	LHA_0461	LHA_0464	Homologs of previously reported genes of unknown function.	UPF0133 family protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.	0.866
LHA_0461	LHA_1765	LHA_0461	LHA_1765	Homologs of previously reported genes of unknown function.	Conserved protein of unknown function [FGE-sulfatase domain]; Homologs of previously reported genes of unknown function.	0.564
LHA_0461	dnaX	LHA_0461	LHA_0465	Homologs of previously reported genes of unknown function.	DNA polymerase III subunits gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.	0.814
LHA_0461	recR	LHA_0461	LHA_0463	Homologs of previously reported genes of unknown function.	Recombination protein recR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.	0.866
LHA_0462	LHA_0461	LHA_0462	LHA_0461	Homologs of previously reported genes of unknown function.	Homologs of previously reported genes of unknown function.	0.866
LHA_0462	LHA_0464	LHA_0462	LHA_0464	Homologs of previously reported genes of unknown function.	UPF0133 family protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.	0.866
LHA_0462	dnaX	LHA_0462	LHA_0465	Homologs of previously reported genes of unknown function.	DNA polymerase III subunits gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.	0.814
LHA_0462	recR	LHA_0462	LHA_0463	Homologs of previously reported genes of unknown function.	Recombination protein recR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.	0.866
LHA_0464	LHA_0461	LHA_0464	LHA_0461	UPF0133 family protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.	Homologs of previously reported genes of unknown function.	0.866
LHA_0464	LHA_0462	LHA_0464	LHA_0462	UPF0133 family protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.	Homologs of previously reported genes of unknown function.	0.866
LHA_0464	dnaX	LHA_0464	LHA_0465	UPF0133 family protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.	DNA polymerase III subunits gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.	0.937
LHA_0464	recR	LHA_0464	LHA_0463	UPF0133 family protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.	Recombination protein recR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.	0.990
LHA_1765	LHA_0461	LHA_1765	LHA_0461	Conserved protein of unknown function [FGE-sulfatase domain]; Homologs of previously reported genes of unknown function.	Homologs of previously reported genes of unknown function.	0.564
dnaX	LHA_0461	LHA_0465	LHA_0461	DNA polymerase III subunits gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.	Homologs of previously reported genes of unknown function.	0.814
dnaX	LHA_0462	LHA_0465	LHA_0462	DNA polymerase III subunits gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.	Homologs of previously reported genes of unknown function.	0.814
dnaX	LHA_0464	LHA_0465	LHA_0464	DNA polymerase III subunits gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.	UPF0133 family protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.	0.937
dnaX	recR	LHA_0465	LHA_0463	DNA polymerase III subunits gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.	Recombination protein recR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.	0.896
recR	LHA_0461	LHA_0463	LHA_0461	Recombination protein recR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.	Homologs of previously reported genes of unknown function.	0.866
recR	LHA_0462	LHA_0463	LHA_0462	Recombination protein recR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.	Homologs of previously reported genes of unknown function.	0.866