STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LHA_0529Phage integrase family protein (fragment). (160 aa)    
Predicted Functional Partners:
LHA_2854
Putative phage-related integrase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the 'phage' integrase family.
 
   
 0.770
LHA_2027
Phage integrase; Function of strongly homologous gene; enzyme; Belongs to the 'phage' integrase family.
 
   
 0.681
LHA_0528
Protein of unknown function; No homology to any previously reported sequences.
       0.578
LHA_2647
Phage repressor.
  
    0.529
topA
DNA topoisomerase; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA superc [...]
  
  
 0.511
LHA_0827
Homologs of previously reported genes of unknown function.
   
    0.495
LHA_2646
Homologs of previously reported genes of unknown function.
  
     0.495
LHA_2617
Putative integrase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.
 
 
 
 0.462
LHA_2639
Homologs of previously reported genes of unknown function.
  
     0.432
LHA_2640
Homologs of previously reported genes of unknown function.
  
     0.419
Your Current Organism:
Legionella hackeliae
NCBI taxonomy Id: 449
Other names: ATCC 35250, CCUG 31232, CCUG 31232 A, CIP 103844, DSM 19214, JCM 7563, L. hackeliae, NCTC 11979, strain Lansing 2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.