LHA_0589 protein (Legionella hackeliae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LHA_0589

Protein of unknown function; Doubtful CDS. (47 aa)

Predicted Functional Partners:

rpoN

0.773

yhbH

0.689

rpmG

0.492

rpmB

0.471

LHA_0585

0.452

Your Current Organism:

Legionella hackeliae

NCBI taxonomy Id: 449
Other names: ATCC 35250, CCUG 31232, CCUG 31232 A, CIP 103844, DSM 19214, JCM 7563, L. hackeliae, NCTC 11979, strain Lansing 2

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LHA_0585	LHA_0589	LHA_0585	LHA_0589	Putative PTS IIA-like nitrogen-regulatory protein PtsN; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Protein of unknown function; Doubtful CDS.	0.452
LHA_0585	rpoN	LHA_0585	LHA_0588	Putative PTS IIA-like nitrogen-regulatory protein PtsN; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	0.814
LHA_0585	yhbH	LHA_0585	LHA_0587	Putative PTS IIA-like nitrogen-regulatory protein PtsN; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Ribosome-associated, sigma 54 modulation protein; Function of strongly homologous gene; factor.	0.965
LHA_0589	LHA_0585	LHA_0589	LHA_0585	Protein of unknown function; Doubtful CDS.	Putative PTS IIA-like nitrogen-regulatory protein PtsN; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	0.452
LHA_0589	rpmB	LHA_0589	LHA_0591	Protein of unknown function; Doubtful CDS.	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.471
LHA_0589	rpmG	LHA_0589	LHA_0590	Protein of unknown function; Doubtful CDS.	50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.	0.492
LHA_0589	rpoN	LHA_0589	LHA_0588	Protein of unknown function; Doubtful CDS.	RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	0.773
LHA_0589	yhbH	LHA_0589	LHA_0587	Protein of unknown function; Doubtful CDS.	Ribosome-associated, sigma 54 modulation protein; Function of strongly homologous gene; factor.	0.689
rpmB	LHA_0589	LHA_0591	LHA_0589	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	Protein of unknown function; Doubtful CDS.	0.471
rpmB	rpmG	LHA_0591	LHA_0590	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.	0.999
rpmB	rpoN	LHA_0591	LHA_0588	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	0.701
rpmB	yhbH	LHA_0591	LHA_0587	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	Ribosome-associated, sigma 54 modulation protein; Function of strongly homologous gene; factor.	0.972
rpmG	LHA_0589	LHA_0590	LHA_0589	50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.	Protein of unknown function; Doubtful CDS.	0.492
rpmG	rpmB	LHA_0590	LHA_0591	50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.999
rpmG	rpoN	LHA_0590	LHA_0588	50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.	RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	0.712
rpmG	yhbH	LHA_0590	LHA_0587	50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.	Ribosome-associated, sigma 54 modulation protein; Function of strongly homologous gene; factor.	0.972
rpoN	LHA_0585	LHA_0588	LHA_0585	RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	Putative PTS IIA-like nitrogen-regulatory protein PtsN; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	0.814
rpoN	LHA_0589	LHA_0588	LHA_0589	RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	Protein of unknown function; Doubtful CDS.	0.773
rpoN	rpmB	LHA_0588	LHA_0591	RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.701
rpoN	rpmG	LHA_0588	LHA_0590	RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.	0.712