motA protein (Legionella hackeliae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

motA

Motility protein A. (291 aa)

Predicted Functional Partners:

motB

0.999

LHA_2250

0.993

flgH

0.947

LHA_2217

0.946

flgC

0.935

LHA_2029

0.933

fliG

0.919

flgB

0.914

flgG

0.902

LHA_2445

0.902

Your Current Organism:

Legionella hackeliae

NCBI taxonomy Id: 449
Other names: ATCC 35250, CCUG 31232, CCUG 31232 A, CIP 103844, DSM 19214, JCM 7563, L. hackeliae, NCTC 11979, strain Lansing 2

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LHA_2029	LHA_2217	LHA_2029	LHA_2217	Homologs of previously reported genes of unknown function; Belongs to the flagella basal body rod proteins family.	Flagellar MS-ring protein; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	0.989
LHA_2029	LHA_2250	LHA_2029	LHA_2250	Homologs of previously reported genes of unknown function; Belongs to the flagella basal body rod proteins family.	Homologs of previously reported genes of unknown function.	0.901
LHA_2029	LHA_2445	LHA_2029	LHA_2445	Homologs of previously reported genes of unknown function; Belongs to the flagella basal body rod proteins family.	Diguanylate cyclase; No homology to any previously reported sequences;/product='fragment of protein of unknown function'.	0.886
LHA_2029	flgB	LHA_2029	LHA_2038	Homologs of previously reported genes of unknown function; Belongs to the flagella basal body rod proteins family.	Flagellar basal-body rod protein flgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.	0.991
LHA_2029	flgC	LHA_2029	LHA_2037	Homologs of previously reported genes of unknown function; Belongs to the flagella basal body rod proteins family.	Flagellar basal-body rod protein flgC.	0.995
LHA_2029	flgG	LHA_2029	LHA_2033	Homologs of previously reported genes of unknown function; Belongs to the flagella basal body rod proteins family.	Flagellar basal-body rod protein flgG; Belongs to the flagella basal body rod proteins family.	0.996
LHA_2029	flgH	LHA_2029	LHA_2032	Homologs of previously reported genes of unknown function; Belongs to the flagella basal body rod proteins family.	Flagellar L-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.	0.995
LHA_2029	fliG	LHA_2029	LHA_2216	Homologs of previously reported genes of unknown function; Belongs to the flagella basal body rod proteins family.	Flagellar motor switch protein FliG; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.	0.990
LHA_2029	motA	LHA_2029	LHA_0921	Homologs of previously reported genes of unknown function; Belongs to the flagella basal body rod proteins family.	Motility protein A.	0.933
LHA_2029	motB	LHA_2029	LHA_0920	Homologs of previously reported genes of unknown function; Belongs to the flagella basal body rod proteins family.	Motility protein B.	0.974
LHA_2217	LHA_2029	LHA_2217	LHA_2029	Flagellar MS-ring protein; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	Homologs of previously reported genes of unknown function; Belongs to the flagella basal body rod proteins family.	0.989
LHA_2217	LHA_2250	LHA_2217	LHA_2250	Flagellar MS-ring protein; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	Homologs of previously reported genes of unknown function.	0.811
LHA_2217	LHA_2445	LHA_2217	LHA_2445	Flagellar MS-ring protein; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	Diguanylate cyclase; No homology to any previously reported sequences;/product='fragment of protein of unknown function'.	0.919
LHA_2217	flgB	LHA_2217	LHA_2038	Flagellar MS-ring protein; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	Flagellar basal-body rod protein flgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.	0.998
LHA_2217	flgC	LHA_2217	LHA_2037	Flagellar MS-ring protein; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	Flagellar basal-body rod protein flgC.	0.999
LHA_2217	flgG	LHA_2217	LHA_2033	Flagellar MS-ring protein; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	Flagellar basal-body rod protein flgG; Belongs to the flagella basal body rod proteins family.	0.998
LHA_2217	flgH	LHA_2217	LHA_2032	Flagellar MS-ring protein; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	Flagellar L-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.	0.998
LHA_2217	fliG	LHA_2217	LHA_2216	Flagellar MS-ring protein; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	Flagellar motor switch protein FliG; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.	0.999
LHA_2217	motA	LHA_2217	LHA_0921	Flagellar MS-ring protein; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	Motility protein A.	0.946
LHA_2217	motB	LHA_2217	LHA_0920	Flagellar MS-ring protein; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	Motility protein B.	0.941