Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
osmCPeroxiredoxin osmC. (141 aa)    
Predicted Functional Partners:
dps
Ferritin and DNA-binding protein Dps; Function of strongly homologous gene; carrier; Belongs to the Dps family.
  
  
 0.793
osmY
Osmotically inducible protein.
   
  
 0.693
LHA_3076
Exported protein of unknown function; No homology to any previously reported sequences.
   
  
 0.693
LHA_0634
D-xylose reductase III.
  
    0.679
LHA_3040
Homologs of previously reported genes of unknown function.
   
    0.677
msrA
Bifunctional methionine sulfoxide reductase B/A protein; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
     
 0.666
LHA_1047
Homologs of previously reported genes of unknown function; Belongs to the UPF0337 (CsbD) family.
  
  
 0.634
LHA_3175
Diguanylate cyclase; Function of strongly homologous gene; enzyme.
  
    0.628
LHA_3196
Putative regulatory protein (GGDEF, PAS, PAC domains); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
   
    0.628
LHA_0993
Protein of unknown function; No homology to any previously reported sequences.
       0.521
Your Current Organism:
Legionella hackeliae
NCBI taxonomy Id: 449
Other names: ATCC 35250, CCUG 31232, CCUG 31232 A, CIP 103844, DSM 19214, JCM 7563, L. hackeliae, NCTC 11979, strain Lansing 2
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