STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LHA_1028Putative secretion protein HlyD family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (334 aa)    
Predicted Functional Partners:
LHA_1029
Conserved membrane protein of unknown function [Fusaric acid resistance protein, conserved region]; Homologs of previously reported genes of unknown function.
 
  
 0.893
LHA_0789
Transporter, major facilitator family.
  
   0.724
LHA_0791
Putative RND efflux system, outer membrane lipoprotein, NodT; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 
 0.601
LHA_0907
Homologs of previously reported genes of unknown function; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
    0.597
tolC
Outer membrane protein TolC.
 
 
 0.582
LHA_0906
Homologs of previously reported genes of unknown function.
 
 
 0.559
LHA_0065
Homologs of previously reported genes of unknown function.
 
   0.549
sfcA
NAD-dependent malic enzyme.
       0.537
LHA_2564
Putative outer membrane efflux protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component.
  
   0.512
acrA-2
RND efflux membrane fusion protein, acriflavin resistance protein E; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
    0.493
Your Current Organism:
Legionella hackeliae
NCBI taxonomy Id: 449
Other names: ATCC 35250, CCUG 31232, CCUG 31232 A, CIP 103844, DSM 19214, JCM 7563, L. hackeliae, NCTC 11979, strain Lansing 2
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