Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ugpBGlycerol-3-phosphate binding periplasmic protein. (423 aa)    
Predicted Functional Partners:
ugpA
Sn-glycerol-3-phosphate transport system permease protein ugpA.
 
 0.999
ugpE
Sn-glycerol-3-phosphate transport system permease protein ugpE; Part of the binding-protein-dependent transport system for sn-glycerol-3-phosphate; probably responsible for the translocation of the substrate across the membrane.
 
 0.999
ugpC
Sn-glycerol-3-phosphate import ATP-binding protein UgpC; Belongs to the ABC transporter superfamily.
 
 0.998
ugpQ
Glycerophosphoryl diester phosphodiesterase.
 
  
 0.915
LHA_1114
Homologs of previously reported genes of unknown function.
       0.866
ldh
Leucine dehydrogenase; Function of strongly homologous gene; enzyme; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
     
 0.633
mdmC
O-methyltransferase mdmC.
       0.598
LHA_1117
Putative Lipolytic enzyme; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
     
 0.577
LHA_1113
Protein of unknown function; No homology to any previously reported sequences.
       0.572
lly
4-hydroxyphenylpyruvate dioxygenase.
       0.562
Your Current Organism:
Legionella hackeliae
NCBI taxonomy Id: 449
Other names: ATCC 35250, CCUG 31232, CCUG 31232 A, CIP 103844, DSM 19214, JCM 7563, L. hackeliae, NCTC 11979, strain Lansing 2
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