STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LHA_1130Phytoene synthase; Function of strongly homologous gene; enzyme. (283 aa)    
Predicted Functional Partners:
crtI
Phytoene dehydrogenase.
 
 
 0.999
LHA_1132
Putative (2E,6E)-farnesyl diphosphate synthase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the FPP/GGPP synthase family.
  
 0.977
LHA_1129
Lycopene cyclase; Function of strongly homologous gene; enzyme.
 
  
 0.936
LHA_0787
Homologs of previously reported genes of unknown function.
    
 0.908
LHA_0635
Geranyltranstransferase; Belongs to the FPP/GGPP synthase family.
  
 0.905
ispB
Octaprenyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family.
  
 0.904
LHA_1128
Membrane protein of unknown function [Beta-carotene 15,15'-monooxygenase, Brp/Blh family]; Catalyzes the cleavage of beta-carotene at its central double bond (15,15') to yield two molecules of all-trans-retinal. Belongs to the Brp/Blh beta-carotene diooxygenase family.
 
     0.903
LHA_0996
Putative sterol desaturase-related protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
 
 0.884
epd
D-erythrose 4-phosphate dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
   
  
 0.873
LHA_1133
Xanthorhodopsin; Function of strongly homologous gene; enzyme.
 
   
 0.872
Your Current Organism:
Legionella hackeliae
NCBI taxonomy Id: 449
Other names: ATCC 35250, CCUG 31232, CCUG 31232 A, CIP 103844, DSM 19214, JCM 7563, L. hackeliae, NCTC 11979, strain Lansing 2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.