Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
crtIPhytoene dehydrogenase. (492 aa)    
Predicted Functional Partners:
LHA_1130
Phytoene synthase; Function of strongly homologous gene; enzyme.
 
 
 0.999
LHA_1129
Lycopene cyclase; Function of strongly homologous gene; enzyme.
 
 
 0.995
LHA_1128
Membrane protein of unknown function [Beta-carotene 15,15'-monooxygenase, Brp/Blh family]; Catalyzes the cleavage of beta-carotene at its central double bond (15,15') to yield two molecules of all-trans-retinal. Belongs to the Brp/Blh beta-carotene diooxygenase family.
 
     0.931
LHA_1133
Xanthorhodopsin; Function of strongly homologous gene; enzyme.
 
   
 0.906
LHA_1132
Putative (2E,6E)-farnesyl diphosphate synthase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the FPP/GGPP synthase family.
  
  
 0.855
LHA_1119
Long-chain-fatty-acid--CoA ligase [Beta-ketoacyl synthase active site]; Function of strongly homologous gene; enzyme.
  
  
 0.615
LHA_1995
Beta-ketoacyl synthase (fragment).
  
  
 0.615
LHA_2609
Putative Aspartate racemase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
     
 0.599
tspO
Tryptophan rich sensory protein TspO; Function of strongly homologous gene; membrane component.
 
  
 0.445
LHA_3260
Putative FAD dependent oxidoreductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
  
 0.429
Your Current Organism:
Legionella hackeliae
NCBI taxonomy Id: 449
Other names: ATCC 35250, CCUG 31232, CCUG 31232 A, CIP 103844, DSM 19214, JCM 7563, L. hackeliae, NCTC 11979, strain Lansing 2
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