STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LHA_1133Xanthorhodopsin; Function of strongly homologous gene; enzyme. (251 aa)    
Predicted Functional Partners:
LHA_1128
Membrane protein of unknown function [Beta-carotene 15,15'-monooxygenase, Brp/Blh family]; Catalyzes the cleavage of beta-carotene at its central double bond (15,15') to yield two molecules of all-trans-retinal. Belongs to the Brp/Blh beta-carotene diooxygenase family.
 
     0.911
LHA_1129
Lycopene cyclase; Function of strongly homologous gene; enzyme.
 
   
 0.904
crtI
Phytoene dehydrogenase.
 
   
 0.899
LHA_1130
Phytoene synthase; Function of strongly homologous gene; enzyme.
 
   
 0.872
LHA_1132
Putative (2E,6E)-farnesyl diphosphate synthase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the FPP/GGPP synthase family.
       0.599
LHA_0165
Deoxyribodipyrimidine photo-lyase; Belongs to the DNA photolyase family.
  
   
 0.515
LHA_3259
Putative methyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
     0.449
LHA_2498
Homologs of previously reported genes of unknown function.
  
     0.436
tspO
Tryptophan rich sensory protein TspO; Function of strongly homologous gene; membrane component.
  
  
 0.404
Your Current Organism:
Legionella hackeliae
NCBI taxonomy Id: 449
Other names: ATCC 35250, CCUG 31232, CCUG 31232 A, CIP 103844, DSM 19214, JCM 7563, L. hackeliae, NCTC 11979, strain Lansing 2
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