omp protein (Legionella hackeliae) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

omp

17 kDa surface antigen. (149 aa)

Predicted Functional Partners:

dnaB

0.603

alr

0.603

LHA_1147

0.468

LHA_1151

0.432

LHA_1146

0.427

Your Current Organism:

Legionella hackeliae

NCBI taxonomy Id: 449
Other names: ATCC 35250, CCUG 31232, CCUG 31232 A, CIP 103844, DSM 19214, JCM 7563, L. hackeliae, NCTC 11979, strain Lansing 2

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LHA_1146	LHA_1147	LHA_1146	LHA_1147	Homologs of previously reported genes of unknown function.	Homologs of previously reported genes of unknown function.	0.597
LHA_1146	alr	LHA_1146	LHA_1149	Homologs of previously reported genes of unknown function.	Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.	0.491
LHA_1146	dnaB	LHA_1146	LHA_1148	Homologs of previously reported genes of unknown function.	Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.	0.550
LHA_1146	omp	LHA_1146	LHA_1150	Homologs of previously reported genes of unknown function.	17 kDa surface antigen.	0.427
LHA_1147	LHA_1146	LHA_1147	LHA_1146	Homologs of previously reported genes of unknown function.	Homologs of previously reported genes of unknown function.	0.597
LHA_1147	alr	LHA_1147	LHA_1149	Homologs of previously reported genes of unknown function.	Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.	0.591
LHA_1147	dnaB	LHA_1147	LHA_1148	Homologs of previously reported genes of unknown function.	Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.	0.591
LHA_1147	omp	LHA_1147	LHA_1150	Homologs of previously reported genes of unknown function.	17 kDa surface antigen.	0.468
LHA_1151	omp	LHA_1151	LHA_1150	Homologs of previously reported genes of unknown function.	17 kDa surface antigen.	0.432
alr	LHA_1146	LHA_1149	LHA_1146	Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.	Homologs of previously reported genes of unknown function.	0.491
alr	LHA_1147	LHA_1149	LHA_1147	Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.	Homologs of previously reported genes of unknown function.	0.591
alr	dnaB	LHA_1149	LHA_1148	Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.	Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.	0.828
alr	omp	LHA_1149	LHA_1150	Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.	17 kDa surface antigen.	0.603
dnaB	LHA_1146	LHA_1148	LHA_1146	Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.	Homologs of previously reported genes of unknown function.	0.550
dnaB	LHA_1147	LHA_1148	LHA_1147	Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.	Homologs of previously reported genes of unknown function.	0.591
dnaB	alr	LHA_1148	LHA_1149	Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.	Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.	0.828
dnaB	omp	LHA_1148	LHA_1150	Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.	17 kDa surface antigen.	0.603
omp	LHA_1146	LHA_1150	LHA_1146	17 kDa surface antigen.	Homologs of previously reported genes of unknown function.	0.427
omp	LHA_1147	LHA_1150	LHA_1147	17 kDa surface antigen.	Homologs of previously reported genes of unknown function.	0.468
omp	LHA_1151	LHA_1150	LHA_1151	17 kDa surface antigen.	Homologs of previously reported genes of unknown function.	0.432