Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yvlCUncharacterized membrane protein yvlC. (70 aa)    
Predicted Functional Partners:
LHA_0969
Sensory box histidine kinase/response regulator.
   
 
 0.919
LHA_2074
Putative sensory box histidine kinase/response regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
   
 
 0.919
LHA_2140
Putative sensory box sensor histidine kinase/response regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
   
 
 0.919
LHA_2313
Sensory box histidine kinase/response regulator (fragment).
   
 
 0.919
LHA_0943
Protein of unknown function; No homology to any previously reported sequences.
   
 
 0.858
gacS/letS
Sensory box histidine kinase/response regulator.
   
 
 0.858
LHA_1259
Exported protein of unknown function; No homology to any previously reported sequences.
       0.552
LHA_1507
Putative Sensory box sensor histidine kinase/response regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
    
   0.486
LHA_2757
Protein of unknown function; No homology to any previously reported sequences.
    
   0.486
LHA_0012
Homologs of previously reported genes of unknown function; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
       0.461
Your Current Organism:
Legionella hackeliae
NCBI taxonomy Id: 449
Other names: ATCC 35250, CCUG 31232, CCUG 31232 A, CIP 103844, DSM 19214, JCM 7563, L. hackeliae, NCTC 11979, strain Lansing 2
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