STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ugpCSn-glycerol-3-phosphate import ATP-binding protein UgpC; Belongs to the ABC transporter superfamily. (363 aa)    
Predicted Functional Partners:
ugpA
Sn-glycerol-3-phosphate transport system permease protein ugpA.
 
 0.999
ugpE
Sn-glycerol-3-phosphate transport system permease protein ugpE; Part of the binding-protein-dependent transport system for sn-glycerol-3-phosphate; probably responsible for the translocation of the substrate across the membrane.
 0.999
ugpB
Glycerol-3-phosphate binding periplasmic protein.
 
 0.996
LHA_1428
Homologs of previously reported genes of unknown function.
  
    0.933
LHA_1429
Predicted hydrolases or acyltransferases (Alpha/beta hydrolase superfamily).
       0.803
fadE-2
Acyl-coenzyme A dehydrogenase.
       0.586
LHA_1424
Quinone oxidoreductase.
  
    0.584
LHA_2083
Putative ABC transporter ATP-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
   
0.544
potC
Spermidine/putrescine transport system permease protein potC.
   
 0.539
potB
Spermidine/putrescine transport system permease protein potB.
 
   
 0.536
Your Current Organism:
Legionella hackeliae
NCBI taxonomy Id: 449
Other names: ATCC 35250, CCUG 31232, CCUG 31232 A, CIP 103844, DSM 19214, JCM 7563, L. hackeliae, NCTC 11979, strain Lansing 2
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