STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LHA_1546Homologs of previously reported genes of unknown function. (290 aa)    
Predicted Functional Partners:
LHA_1547
Carbon storage regulator CsrA.
       0.866
LHA_1119
Long-chain-fatty-acid--CoA ligase [Beta-ketoacyl synthase active site]; Function of strongly homologous gene; enzyme.
  
 0.683
LHA_1995
Beta-ketoacyl synthase (fragment).
  
 0.683
LHA_2609
Putative Aspartate racemase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
   
 0.597
LHA_2597
Protein of unknown function [coiled-coil domain]; No homology to any previously reported sequences.
    
 0.563
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.544
LHA_1423
Protein of unknown function [Cytochrome P450 domain]; No homology to any previously reported sequences; Belongs to the cytochrome P450 family.
  
 0.513
LHA_1548
Protein of unknown function; No homology to any previously reported sequences.
       0.470
LHA_3205
AMP-dependent synthetase and ligase (fragment).
   
 0.440
rpsF
30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
       0.425
Your Current Organism:
Legionella hackeliae
NCBI taxonomy Id: 449
Other names: ATCC 35250, CCUG 31232, CCUG 31232 A, CIP 103844, DSM 19214, JCM 7563, L. hackeliae, NCTC 11979, strain Lansing 2
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