STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LHA_1559Homologs of previously reported genes of unknown function. (163 aa)    
Predicted Functional Partners:
gabD
Putative succinate-semialdehyde dehydrogenase [NADP+]; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
       0.866
LHA_1560
NAD-glutamate dehydrogenase; Function of strongly homologous gene; enzyme.
       0.706
LHA_1557
Putative phosphatidylcholine synthase; Condenses choline with CDP-diglyceride to produce phosphatidylcholine and CMP; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
    0.632
LHA_1555
Homologs of previously reported genes of unknown function.
       0.582
LHA_1556
Homologs of previously reported genes of unknown function.
       0.582
LHA_1554
Putative Thioredoxin-like protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.550
dacA
D-alanyl-D-alanine carboxypeptidase dacA; Belongs to the peptidase S11 family.
    
 0.550
LHA_2880
Serine-type D-Ala-D-Ala carboxypeptidase; Function of strongly homologous gene; enzyme.
     
 0.507
LHA_0596
Homologs of previously reported genes of unknown function.
  
     0.464
hbpA
Bacterial extracellular solute-binding protein.
 
     0.410
Your Current Organism:
Legionella hackeliae
NCBI taxonomy Id: 449
Other names: ATCC 35250, CCUG 31232, CCUG 31232 A, CIP 103844, DSM 19214, JCM 7563, L. hackeliae, NCTC 11979, strain Lansing 2
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