Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| LHA_0743 | mutT | LHA_0743 | LHA_1666 | Methylated-DNA--protein-cysteine methyltransferase. | Mutator MutT protein; Belongs to the Nudix hydrolase family. | 0.430 |
| LHA_0743 | polA | LHA_0743 | LHA_0215 | Methylated-DNA--protein-cysteine methyltransferase. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.681 |
| LHA_0743 | recJ | LHA_0743 | LHA_1662 | Methylated-DNA--protein-cysteine methyltransferase. | Single-stranded-DNA-specific exonuclease recJ. | 0.420 |
| LHA_1664 | LHA_1667 | LHA_1664 | LHA_1667 | Protein of unknown function; No homology to any previously reported sequences. | Homologs of previously reported genes of unknown function. | 0.440 |
| LHA_1664 | dusA | LHA_1664 | LHA_1663 | Protein of unknown function; No homology to any previously reported sequences. | tRNA-dihydrouridine synthase A; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs; Belongs to the Dus family. DusA subfamily. | 0.681 |
| LHA_1664 | mutT | LHA_1664 | LHA_1666 | Protein of unknown function; No homology to any previously reported sequences. | Mutator MutT protein; Belongs to the Nudix hydrolase family. | 0.470 |
| LHA_1664 | recJ | LHA_1664 | LHA_1662 | Protein of unknown function; No homology to any previously reported sequences. | Single-stranded-DNA-specific exonuclease recJ. | 0.472 |
| LHA_1664 | secA | LHA_1664 | LHA_1665 | Protein of unknown function; No homology to any previously reported sequences. | Protein translocase subunit secA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. Belongs to the SecA family. | 0.470 |
| LHA_1664 | yfdZ | LHA_1664 | LHA_1660 | Protein of unknown function; No homology to any previously reported sequences. | Putative aminotransferase, PLP-dependent; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. | 0.469 |
| LHA_1667 | LHA_1664 | LHA_1667 | LHA_1664 | Homologs of previously reported genes of unknown function. | Protein of unknown function; No homology to any previously reported sequences. | 0.440 |
| LHA_1667 | dusA | LHA_1667 | LHA_1663 | Homologs of previously reported genes of unknown function. | tRNA-dihydrouridine synthase A; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs; Belongs to the Dus family. DusA subfamily. | 0.438 |
| LHA_1667 | mutT | LHA_1667 | LHA_1666 | Homologs of previously reported genes of unknown function. | Mutator MutT protein; Belongs to the Nudix hydrolase family. | 0.727 |
| LHA_1667 | polA | LHA_1667 | LHA_0215 | Homologs of previously reported genes of unknown function. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.425 |
| LHA_1667 | secA | LHA_1667 | LHA_1665 | Homologs of previously reported genes of unknown function. | Protein translocase subunit secA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. Belongs to the SecA family. | 0.752 |
| dusA | LHA_1664 | LHA_1663 | LHA_1664 | tRNA-dihydrouridine synthase A; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs; Belongs to the Dus family. DusA subfamily. | Protein of unknown function; No homology to any previously reported sequences. | 0.681 |
| dusA | LHA_1667 | LHA_1663 | LHA_1667 | tRNA-dihydrouridine synthase A; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs; Belongs to the Dus family. DusA subfamily. | Homologs of previously reported genes of unknown function. | 0.438 |
| dusA | mutT | LHA_1663 | LHA_1666 | tRNA-dihydrouridine synthase A; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs; Belongs to the Dus family. DusA subfamily. | Mutator MutT protein; Belongs to the Nudix hydrolase family. | 0.480 |
| dusA | recJ | LHA_1663 | LHA_1662 | tRNA-dihydrouridine synthase A; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs; Belongs to the Dus family. DusA subfamily. | Single-stranded-DNA-specific exonuclease recJ. | 0.636 |
| dusA | secA | LHA_1663 | LHA_1665 | tRNA-dihydrouridine synthase A; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs; Belongs to the Dus family. DusA subfamily. | Protein translocase subunit secA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. Belongs to the SecA family. | 0.500 |
| dusA | yfdZ | LHA_1663 | LHA_1660 | tRNA-dihydrouridine synthase A; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs; Belongs to the Dus family. DusA subfamily. | Putative aminotransferase, PLP-dependent; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. | 0.609 |
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