STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ispAPutative saccharopine dehydrogenase; Function of strongly homologous gene; enzyme;/product='Geranyltranstransferase (Farnesyl-diphosphate synthase) (FPP synthase) (fragment)'. (345 aa)    
Predicted Functional Partners:
LHA_1119
Long-chain-fatty-acid--CoA ligase [Beta-ketoacyl synthase active site]; Function of strongly homologous gene; enzyme.
     
 0.433
LHA_1995
Beta-ketoacyl synthase (fragment).
     
 0.433
alkB
Alkane 1-monooxygenase 1; Gene remnant;/product='fragment of protein of unknown function'.
  
    0.428
LHA_0202
Putative membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
     0.426
LHA_2465
Flavin containing monooxygenase.
  
   
 0.420
LHA_0996
Putative sterol desaturase-related protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.416
Your Current Organism:
Legionella hackeliae
NCBI taxonomy Id: 449
Other names: ATCC 35250, CCUG 31232, CCUG 31232 A, CIP 103844, DSM 19214, JCM 7563, L. hackeliae, NCTC 11979, strain Lansing 2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.